Hi Bill,
Behe’s model is not about bacteria - it’s about all organisms.
That post I keep referring you to - the one where phage lambda generates a new binding site with four mutations - is really quite informative on this issue. I think it would greatly help you understand what Behe is arguing, and why his argument just does not work.
Here it is again: http://biologos.org/blogs/dennis-venema-letters-to-the-duchess/the-evolutionary-origins-of-irreducible-complexity-part-4
Why not have a read through and then ask questions if you have any?