Academic persecution of ID proponents

Well, I mined through that long thread and found this:

So, if I were to take @glipsnort literally here, he is saying there is at least a 5.5% divergence between the human and chimp genome. Much higher than the 1.5% or 2% number in the popular press. At 3Gb that 5.5% difference is a 165 Kb difference.

However, what I am really looking for is a way to verify myself. I thought I could just BLAST the genomes at NCBI, but for whatever reason my BLAST queries cannot find any similar portions between human and chimp genomes.